Gene detail

Detailed information of OS493_005618-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3212666...3228760
NR annotation: KAJ7365509.1, hypothetical protein OS493_005618 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_005618-T1

ATGAGCAAAGGAAAAGAGGCAGGGAAAATCCAAGTTTACGTTCGAGTGCGTCCATTCACGGAGAGAGAACAGGAGAAACGAGAAACAAATGCGATTGAAATTCATCAAGAACACTCTCTGGTGTACCTCAAGGTTGGGAAAACATTCACACTGCTGTCAGACGATGGTGTTACCACGCGAGTTGTCCAACACTGCTTTGAGAAAATTGACAACGATGAGATTCACACCTACAAGTCTATCAAGAAAGGTCTACGATCTTCTGAATCCGCGGTTTGTTGTGGACTTACCAGTCAGAGAACATCCAAAAAAGGAGTATACGTTGCAAACTTAACCCAACACGAGGTGAAAAGTGCCGGAGATGTGTTCGCTCTCTTGGAAATTGGAAAGCAACATCTCGTTATCGCGGAAACAAAAATGGTCAGACATTCCAGCAGATCCCATTCGATCATGCAGCTGATTATCGAAAGAAGATTAAAAGCACATATCGCCAATGAAAAACCGCCAAGTCAGGGTGAAACTGTCGTGTCTCACGAGGCCGTTCAAGAATCAATCATGGCCGTGGATGAGACGATTAACAACCTCATAAAAGAACTGAAACAAGAAAGGAAAACCCATCATAAGCGTGAACGAGAAATGTTTGAAAGAGTTAATGGAGAAAGAGGTGAGTCAGTGCTAAACAAAGGAAACAATTTTGAGGGCGATCTCATTGTGAAAGGAAAAATCAACCTATGTGATTTAGCCGGAAGTGAGCGGCTGACGAAAACCAAAGCTGAAGGAGTACGTCTTACCGAGGCGAAGTATTTAAATACGTCACTACTTGAGCTTGGGAATGTGATCCACGCCCTTGCACGTGGACACAAGCGTCACGTGCCATACCGCAACTCTACTCTCACCAGACTCCTACAAGACTGCCTCGGTGACAATGGAAAAACAAATTTTATCGTGGACTATAAAGTATTGGCCGAGAGATTGGCCAAGAAACTCGAGGATCAAGAAATTAAATACAAGTTCGAGAAGCTGGAATACCTCAGAGAAATACAGCGCCTCAAGTCCGCGATAAGCTGTTACCAGGAGAGTGAGAACTTCGCTGGGAAAGATCATGAGAAGTTAGTGACAGTGATTGCTAACCTGTCTAAAAGCGTCCAACGAGAGAAGGAGGAAAAGAACAATCTCCATACTGAGCTGGTGTGCCTCAAGAAACAGGCGTCGCAGCCGATAGGAACAAGCGCTCCTGATGTCGAGGCTGTCCTGCTGGCTGAGCTGATGTCCATGGAACTGTTGGCAAATTTACAAAACCCGGATGCAGCCAAGAGCATTCTTTCAGATAGCTCGTTACCAGCCAAGGTAAAAAGTCACCTGGCATTAGCCGACACTCAGGAAACTCTTTTAAACAACGCCGGGTGTTTCCTACAGTTGCTGGACTTGCATCTTGACACTGAGTTGGACGCCAACGGGAGAAAGCTTGCAGCCTCCGAGGCCAAGGAATACCTACAGTTTAATTTCTCCAGGGCCGGCTCGGTGGAGTTATTTTCCAAAGACTGCTCGATTAAAATTTCTCCCAGGGGTATCCCCCAAGAGCCGTGCCTCAGCCTACCCATGTACAATGCCGGTAATGCGGATGAAAATGCCACTGGACTAGCGGGTGGAGTGCGAAGAATGCTGGGTAAACTAATTGGCAGAGAGAGCAAGGATAGAACACCTGTGTCGCCTGGTGTTCAGCCGAGCAGCCGTGCATGCCCTGTTCCCGTCAGTGACGTAAGCACACGTGTTCGTGACCACGAGGAAGCCATGATTAAAACCAAGGCGCTGTTGACACAGTTGACAAGCTCCAAGGAGAAAGTGGAGCAACAAGTGCTTGGTTTGCTGTCGACACTGTTTGACGAACAAATTACCAAGAACGAAGGACAATGCCCGCAGTGGAATGAGTTGGGAAAGAAACTGACCAAGCTGATCATGTTTCGACGTAACAATATGCCTGGTTTAAGTGAAGCAGATTTGTGGGCCAACTCTGATGATTTGAATGCAATCCTGGAGAACTGTCTTCGGTTTGTCATCATTGATAAAGCTCTGTTGGCTTGTCTGCTGGTGATAGAGCTTTTAGATCTAAGGCAAGTGTGTGGAACATTTGAGGACAGAAGGAAGCCTCCGAGCAAGAGTGTCCCAGAAAAAAGCGCCGCTCACCAAAATCTGCCTCAAAGCATGTCATTTTCGAATAAATCGCAGGATGAGAAGTCAAACGTAAAAGGAAGCGGCAAATCACCCGCTATTTATGGAAGCAAGAAAGTTGCCTCCAACGGCCAGGAGATTGGGTTGAACACGCCACCAGGTTCCGTATCACCGAGACGAGAGAAACTAAAGAATCTCAAACACACCAAAACAGAACTGGAAAGGGAAATAACTGACATGCATGAAGACACGACAATTCTTGAAACAGAGCTATTCTCGAGCATGGAGGAAAAAACCAAAGTTGAAGAGGAACTGTACGGAATGAAGCACCACGTGACAAAACTCAGGTCTGAATTGTTCCATCTTAAGCTCGAAAAATCCAACTTGGAATGTGATGTCAAAAGATCTAACAGCCAAGAGAATTTACAGCAAAGTACGGATTTGGATGGATCAAAACCCGCTATTGAGTCGCCCAAGGAACCACAAAGAGGATATCCTGAGCTCTCAGACGTCATGGAAGCTTCGCACGAAAGCAATGACAGCGAGAACAGTTCGCAGATGTCCGATGGAAATGAGACCAGAGAGGCGTTCTTAAAAACGTGTATGGAAAATATCTCGAAAATTTACACGCTTATGCCGAACCCTGACGAGGAAGTAGCGAGTGAAGACGAACTTTCTGACGACCAAGAACCGACGCTTTCCGACGCGAACATCGACGACAGCGATGAAGAGATCATTATCACAAAACTTGCCCGAAGCCTTCGTTCGCCTTGCACAAGTCCAGCGAAAGAAAAGGCATTTGAAGCTTCATCGCCAAATAAGGGTGGAAAGAAGCAAACTGTTGTCGGTCAAAGCTACAAAATCAACACGGGGAATGATGTCACTGAAGACTTTGGAAGCAAGTCGACAGAGGCGCTAGTCAAACAAATACATGAACTTAAGAGGAAGTTGCACAAATCTGAACAAGAGTTAGCTGAAGCTCGAGAAGCCAACGAGGATTTGGAAGAGGAGCTTGATCACAAAAAGGGCAGTTAG

Transcript

OS493_005618-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17210	Kinesin heavy chain OS=Drosophila melanogaster OX=7227 GN=Khc PE=1 SV=2
P56536	Kinesin heavy chain isoform 5C OS=Rattus norvegicus OX=10116 GN=Kif5c PE=1 SV=3
P28738	Kinesin heavy chain isoform 5C OS=Mus musculus OX=10090 GN=Kif5c PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000590 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR047149 all species →	Family	Kinesin-like protein KIF11-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47970 all species →	KINESIN-LIKE PROTEIN KIF11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0008574 all species →	Molecular Function	plus-end-directed microtubule motor activity	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005618-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_005618-T1 global co-expression network