Gene detail

Detailed information of OS493_005663-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3851562...3853571
NR annotation: KAJ7365550.1, hypothetical protein OS493_005663 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P75863	Uncharacterized protein YcbX OS=Escherichia coli (strain K12) OX=83333 GN=ycbX PE=1 SV=1
Q922Q1	Mitochondrial amidoxime reducing component 2 OS=Mus musculus OX=10090 GN=Mtarc2 PE=1 SV=1
O88994	Mitochondrial amidoxime reducing component 2 OS=Rattus norvegicus OX=10116 GN=Mtarc2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001380 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03473 all species →	MOSC	MOSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005302 all species →	Domain	Molybdenum cofactor sulfurase, C-terminal	Interproscan

PANTHER

No PANTHER signature was detected for OS493_005663-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030151 all species →	Molecular Function	molybdenum ion binding	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005663-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005663-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

101.5Max TPM

26.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.36	40.58
polyp at pH7 6	18	18	31.74	57.66
coral polyp · control treatment	16	16	23.13	63.36
coral polyp · oil and dispersant treatment	16	16	35.58	101.46
coral polyp · oil treatment	16	16	23.69	53.56
coral polyp · dispersant treatment	16	16	10.30	25.00
Polyp	10	10	34.95	67.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.47
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	67.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	56.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	39.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.