Gene detail

Detailed information of OS493_005666-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3865074...3870084
NR annotation: KAJ7365553.1, Mitochondrial amidoxime reducing component 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GKW0	Mitochondrial amidoxime reducing component 2 OS=Macaca fascicularis OX=9541 GN=MTARC2 PE=2 SV=1
Q9CW42	Mitochondrial amidoxime-reducing component 1 OS=Mus musculus OX=10090 GN=Mtarc1 PE=1 SV=2
Q969Z3	Mitochondrial amidoxime reducing component 2 OS=Homo sapiens OX=9606 GN=MTARC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001359 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03476 all species →	MOSC_N	MOSC N-terminal beta barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011037 all species →	Homologous_superfamily	Pyruvate kinase-like, insert domain superfamily	Interproscan
IPR005303 all species →	Domain	Molybdenum cofactor sulfurase, middle domain	Interproscan
IPR005302 all species →	Domain	Molybdenum cofactor sulfurase, C-terminal	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_005666-T1 in Lophelia pertusa.

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030151 all species →	Molecular Function	molybdenum ion binding	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27318	MTARC; mitochondrial amidoxime-reducing component	EC:1.7.-.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005666-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

54.5Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.18	54.50
polyp at pH7 6	18	18	24.37	45.44
coral polyp · control treatment	16	16	8.46	15.29
coral polyp · oil and dispersant treatment	16	14	6.74	23.60
coral polyp · oil treatment	16	16	10.09	32.15
coral polyp · dispersant treatment	16	16	5.92	18.08
Polyp	10	9	8.45	20.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.