Gene detail

Detailed information of OS493_005667-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3871814...3879134
NR annotation: KAJ7365554.1, Mitochondrial amidoxime reducing component 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LZH1	Mitochondrial amidoxime reducing component 2 OS=Bos taurus OX=9913 GN=MTARC2 PE=2 SV=1
O88994	Mitochondrial amidoxime reducing component 2 OS=Rattus norvegicus OX=10116 GN=Mtarc2 PE=2 SV=1
Q922Q1	Mitochondrial amidoxime reducing component 2 OS=Mus musculus OX=10090 GN=Mtarc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001380 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03476 all species →	MOSC_N	MOSC N-terminal beta barrel domain	Domain	Interproscan
PF03473 all species →	MOSC	MOSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005303 all species →	Domain	Molybdenum cofactor sulfurase, middle domain	Interproscan
IPR011037 all species →	Homologous_superfamily	Pyruvate kinase-like, insert domain superfamily	Interproscan
IPR005302 all species →	Domain	Molybdenum cofactor sulfurase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14237 all species →	MOLYBDOPTERIN COFACTOR SULFURASE MOSC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030151 all species →	Molecular Function	molybdenum ion binding	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005667-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005667-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

38.9Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.86	19.42
polyp at pH7 6	18	18	13.50	18.58
coral polyp · control treatment	16	16	8.88	38.95
coral polyp · oil and dispersant treatment	16	16	4.38	13.55
coral polyp · oil treatment	16	16	6.12	16.01
coral polyp · dispersant treatment	16	16	5.16	13.42
Polyp	10	10	8.18	14.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.