Gene detail

Detailed information of OS493_005673-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3913539...3921610
NR annotation: KAJ7365559.1, Mitochondrial amidoxime reducing component 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GKW0	Mitochondrial amidoxime reducing component 2 OS=Macaca fascicularis OX=9541 GN=MTARC2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001380 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03476 all species →	MOSC_N	MOSC N-terminal beta barrel domain	Domain	Interproscan
PF03473 all species →	MOSC	MOSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011037 all species →	Homologous_superfamily	Pyruvate kinase-like, insert domain superfamily	Interproscan
IPR005303 all species →	Domain	Molybdenum cofactor sulfurase, middle domain	Interproscan
IPR005302 all species →	Domain	Molybdenum cofactor sulfurase, C-terminal	Interproscan

PANTHER

No PANTHER signature was detected for OS493_005673-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030151 all species →	Molecular Function	molybdenum ion binding	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06940	K06940; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005673-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

78TPM > 0

7Conditions

98.4Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	8	4.03	18.18
polyp at pH7 6	18	3	1.41	9.16
coral polyp · control treatment	16	16	6.71	12.43
coral polyp · oil and dispersant treatment	16	14	7.09	25.92
coral polyp · oil treatment	16	16	8.32	16.89
coral polyp · dispersant treatment	16	14	7.68	30.76
Polyp	10	7	18.07	98.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	98.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	63.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.