Gene detail

Detailed information of OS493_005709-T1 in Lophelia pertusa

Genomic Location: scaffold_11:4846240...4863544
NR annotation: KAJ7365592.1, platelet maturation [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_005709-T1

ATGGCAGACCCCCAAGTCGAACCTGCTAAAAAGTTGAAAAGAACAGCCATCAAGACATCAAGCAGTCCCCAAAAGCCTAAAGTTTTGAAACACAAACAAGGATCCGTTGTTGAAAATCAAGCTCTTGAGGAAAGTGAAGACTCAGATGACAATGCTAATCAACTTCAAGCACCACTGACATTTGAAGAAAATAGCAACACGAGTTTTGACTCTGATTCTCAACCTGAGGATATTCTGAATGTCCTTCTAACAGATGAAGACAGTTGTGAAATGGAAGTTGAGGAAAGTAGCCCCGATCCAATTCAAAGGCGTCTAGCTGAGAATTTTCTTCCACGGACAATAGAGATTACCGGTAAAATCAATGTGGACTGTGTTCTTATACCAATTTGTGCTCTTCTAAATTCTGGTGGTGGAGTGTTGGTGATAACAATTGCTGACTATTCAAAATGTGAAAATCCATTCAAAAAGTTGGATGTATTTTGGCAGAAGCTGGAGACTAGATTAGAGTCTATGATTCAACCGTCAAGCTGTAATGAGGTCTTTGACCGTGTCATTAAGCAGGATAGAATCATCCTTTTTATCAAGGCACCGAACCATTGGTGCACAATGAAGTATAATTTGATTTTGCCCGGTGAATCAAAAAAGTTGGTTCCTTCATTCAGAAACACTGTGGAGTTGCTATTGAATAAACCAGTTGGAAAGAAAAAAAAGTTTTCATATTGTAAGGTTCGTCTTGAAAAGCTTCCTCCCTTGCCAGAAAGATATCTATACGAGCAGAAACTTGACTTCCACGAGTCCAAAAATATCCAATTGAAACATTTTGAATCCGACAACGGAATATTACACAATAATAACCGTACACAGCATGACAAAATTGTGGAACAAATTTCCGCCTTTGCAAATGGGAGTGGAGGAATAATTCTCATTGGGGTGAAAGATGATGGCACAGTACTTGGCCAGAATTTGGACTCTGAGGGAAACAGAAAAGAAGACGTGAAGGAGAGAGTGGAGTTGATTGTTCAAGGAATGAAATGGAGTTGTACTCCCGAGAGCAACCTTCACTGGAAAGTGGATTTCATTCCAGTCGGACAGGACAAGGAATGCTGCTATGTTATAGCGATCTCTGTTGCAGGAATGAAAGGAGGAGTCTTCACAAAGAGTCCAAAGAGCTATGAGTTGAGACCTGGGGATGATGGAGAGGAAACTATTCATCTTCTTGAGTTTAAGGAGTGGAAGCAACGGATACTGTGTGGGACAAATATGCTGCAAAATGAAAGCAAAGCAATGAGAGAAGTGAATAAAAAGTTCAATGCTCTTTCCATTTCTGATCGAGTACTGCTGACTGTGAAAGGTTCTGTTGGAAAGATCAGGGAATCCTTCTTCACAGTTGGAAAAGGATGTCCAATTTCTCCTAAAGGTTTTGAATCAAACCTACCAGAGGCAGCACAGTTGGTTATAAGACGGCTCCAAGAGATGTCTTCGAGAGGTCGCAACCGTGCACTTCTTGTTGCCTCCCGTTCATTGAATTCCAGTATAAACGGAAAAAGTCTTTCAGTTGATGGTGTCATCTGTGATCTGCTGCTTTTCAATGCTGAGCTGGGAGGACTGCACCTCTTCACCCTTTGCGACAGTGAAACAGATGAGCAGTTCTTGTCATACAGCCACGCTACCGCTAAAGCTTTGAAGAAAGCTCTTGTGACCATAGGAGGTTGTCATGAACAGTTCTACATCGTGCACCATGTGGTTCCCTGCCGTGCACCTGCACCAACTGAGCAAATTGGTCAGCTTTTTCCAGACAGCCGATACCCCCAGGAGTATGATCTGGAAAAGCCACGTGATAAGATCAATAAGATTCTTGAATCGTTAGTGATTATTCTAGCGACGGTCACAGTGCCATCTCCCCTCTCAAACAAGCAGGGGATCAGCTTTTTAAATCTACTGACCAAGGAACAATTCCAGTTGGTGTACCAGGAAATTGATTACCATAGAGAACTATGGATAAAGGGTGTTGCGGGAAGTGGGAAAACTCTTGTGGCAGTCGAGTTTGTAAAAGAGCTCCGTCGCCGTCATCCTAACCTGAAGCAGGATGAAATACTGTACGTGTGTGAGAACAAGGGAATCAGACAGCAAATAAGTAATCATGGTATATGCCAATGTGTTTGCCGTGCAACCTTCATGCTGCGAAAGGATTGGTCTGAAGTCAAGCACATAGTGATGGACGAAGTGCAGAGTTATCGAGACGGGGACCGCGAACGGGACGGAGACAACTGGCTCCAGAAAGCAAAGAAGGTTGTTCGGCAGCATTCAATTGAGAATCCAGGTTACCTGTGGCTGTTCATTGACAAAAACCAGATAAACCACTGCCATCCAACGGCCATCCCTTTAGAACGTGAACAAGTGCCGGATTTTCGTTTAAGAAGAGTAATTAGAAATTCGAAGAGAATCGTTGAGTTCGCATCAAAAATATGTCTCGACAAAAATGCTGCAAAAGATATAGAAATGGGTCACGATTTGAAGGAGAAGAAGTGA

Transcript

OS493_005709-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1ARD6	Schlafen family member 9 OS=Mus musculus OX=10090 GN=Slfn9 PE=2 SV=1
Q5U311	Schlafen family member 13 OS=Rattus norvegicus OX=10116 GN=Slfn13 PE=1 SV=1
B1ARD8	Schlafen family member 8 OS=Mus musculus OX=10090 GN=Slfn8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04326 all species →	SLFN_AlbA_2	Schlafen, AlbA_2	Domain	Interproscan
PF21026 all species →	SLFN_GTPase-like	Schlafen, GTPase-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029684 all species →	Family	Schlafen family	Interproscan
IPR007421 all species →	Domain	Schlafen, AlbA_2 domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048729 all species →	Domain	Schlafen, GTPase-like domain	Interproscan
IPR038461 all species →	Homologous_superfamily	Schlafen, AlbA_2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12155 all species →	SCHLAFEN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_005709-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24459	SLFN13; schlafen family member 13	EC:3.1.-.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_005709-T1 global co-expression network