Gene detail

Detailed information of OS493_005744-T1 in Lophelia pertusa

Genomic Location: scaffold_12:395862...403568
NR annotation: KAJ7339350.1, Heparan sulfate 2-O-sulfotransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R621	Heparan sulfate 2-O-sulfotransferase 1 OS=Pongo abelii OX=9601 GN=HS2ST1 PE=2 SV=1
Q7LGA3	Heparan sulfate 2-O-sulfotransferase 1 OS=Homo sapiens OX=9606 GN=HS2ST1 PE=1 SV=1
Q76KB1	Heparan sulfate 2-O-sulfotransferase 1 OS=Gallus gallus OX=9031 GN=HS2ST1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007734 all species →	Family	Heparan sulphate 2-O-sulfotransferase	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12129 all species →	HEPARAN SULFATE 2-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004394 all species →	Molecular Function	heparan sulfate 2-O-sulfotransferase activity	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0015014 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Interproscan
GO:0015015 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005744-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005744-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

26.5Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.44	16.08
polyp at pH7 6	18	18	11.19	18.24
coral polyp · control treatment	16	16	13.80	26.49
coral polyp · oil and dispersant treatment	16	15	10.63	19.52
coral polyp · oil treatment	16	16	12.01	17.70
coral polyp · dispersant treatment	16	16	9.93	16.11
Polyp	10	9	8.57	16.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.