Gene detail

Detailed information of OS493_005765-T1 in Lophelia pertusa

Genomic Location: scaffold_12:664166...676913
NR annotation: KAJ7339371.1, NADPH-dependent diflavin oxidoreductase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHB4	NADPH-dependent diflavin oxidoreductase 1 OS=Homo sapiens OX=9606 GN=NDOR1 PE=1 SV=1
Q6PFP6	NADPH-dependent diflavin oxidoreductase 1 OS=Danio rerio OX=7955 GN=ndor1 PE=2 SV=1
Q6NRG5	NADPH-dependent diflavin oxidoreductase 1 OS=Xenopus laevis OX=8355 GN=ndor1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001660 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR028879 all species →	Family	NADPH-dependent diflavin oxidoreductase 1	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19384 all species →	NITRIC OXIDE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003958 all species →	Molecular Function	NADPH-hemoprotein reductase activity	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005765-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005765-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

13.7Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.20	6.19
polyp at pH7 6	18	18	5.54	10.91
coral polyp · control treatment	16	16	4.10	7.27
coral polyp · oil and dispersant treatment	16	16	2.05	3.97
coral polyp · oil treatment	16	16	4.05	6.58
coral polyp · dispersant treatment	16	16	2.29	4.36
Polyp	10	9	6.15	13.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.