Gene detail

Detailed information of OS493_005795-T1 in Lophelia pertusa

Genomic Location: scaffold_12:1122821...1134876
NR annotation: KAJ7339400.1, Small RNA 2'-O-methyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BVR9	Small RNA 2'-O-methyltransferase OS=Gallus gallus OX=9031 GN=HENMT1 PE=3 SV=1
Q32PY6	Small RNA 2'-O-methyltransferase OS=Rattus norvegicus OX=10116 GN=Henmt1 PE=2 SV=1
C0IN03	Small RNA 2'-O-methyltransferase OS=Xenopus tropicalis OX=8364 GN=henmt1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005321 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR026610 all species →	Family	3'-RNA ribose 2'-O-methyltransferase, Hen1	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21404 all species →	HEN1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20798	HENMT1; small RNA 2'-O-methyltransferase	EC:2.1.1.386	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005795-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

9.1Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.53	8.54
polyp at pH7 6	18	18	5.67	9.07
coral polyp · control treatment	16	16	4.40	6.54
coral polyp · oil and dispersant treatment	16	16	2.71	6.65
coral polyp · oil treatment	16	16	3.92	6.99
coral polyp · dispersant treatment	16	16	2.59	7.93
Polyp	10	9	3.00	7.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.