Gene detail

Detailed information of OS493_005827-T1 in Lophelia pertusa

Genomic Location: scaffold_12:1432338...1446627
NR annotation: KAJ7339429.1, hypothetical protein OS493_005827 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_005827-T1

ATGTTGGAACCGAGTTCAACGCCGAGCAAAGAAAACTGTCCACTTCTCAACAACGTTCATTCGAAACGTGCTCAGTGGTACAGTCCGTGCAAGAATTCTCCTAAAATACCTCTTTCTCCAGAGCCTGATGCGCCGACTCTTAAACTAACTCACTTCGCCACGATTCCTAAGATATCATTTGGAACTGTGAAGGTCGGAAGCAGCAAAACAGAGCCGTTTGTCGTATTCAACCCACATGCGCTGAGTCAAACTTTGGCGATAGAGAAATGCCCAACGGATAAAGGTTTCACGTTAGATCTGAGTGGGAATAGCGAGAATTCTGAAGAGAATTTTGTGTCGATACCACCAAACGACGAGGTGTTCTTGTCGATCAAATGGGAGCCAAAGGAGAGTGGCAGCTGTCGTGAGATTGTTCGATTCAAGTGGGACGATTCTCTTCGTCTTCAAGTTGTAGTGTTTGGGACGGCTCTGGGACCAAAGAAAGTCAAATCTGCACCCAAACGCAGCTTTAAGAAACCTCAAATAAACAAGAAAATTCCCAAAGCTGTACTTCAACCAAGCCAAGTTCCAAATACTTGTGATGCAAAAACAAATGGCATTACAGTTTTTGAGAACATCAACAGTGACAAATTTGCTTCCGAGAATATACCTTTGGAAAATCTGTCTGAAGAGAATCTGCGACGTGACACATATCTTGTCAAAAGTAAAGCAAAACCCCAACCAAGTTGCAAGATCAAGCTGAACCCATCAACTCCAAAAATTGCAAAGCTAACAAGCAAGCCGGTTGCTGTAAAAGCTAAGAAAATAGTTGTATCGAAGAAGAAACTTTCTCCAGCTTCAGGAATATTTAAAAAGAAACCCAAGCCAAAGATGAAGTTAAAAGTTGCAGCTAAAGGAATACCGCAAGAAAACTACAACTGGTTAAAACTCCTAAGAGCAAGTTCCTTCCACGGCATCCAATGCCATTTGCAGCAAAGAACATGTACTATGATGAGAGATGGATTGAAAAACAAGAGGAAGAACTATCTTTTTTTCTATCACAACTACATGTATCATTCTGGTACTATAAAAGGTTTCACTAAATGGCTCAACTTTGTACTGACTCCACATGATGTAACAGATTCCAATGCACAAGCTGACAGCAATAAAGGAAATGTTGTCCTTGGAGGAGCTAAAGATGTAAAGAAGTCCCAACCCTTGGCCCCTACAAGAGAGGTCCTCTCCTTTAGGGCCTATACTGCTAGACGCAAGATGGCTCGTTTACGAAGATGTGCTTGTCTGCTGTACCAATCAGAGCCCCTTGGACACATCATTCGAAAGATAGAAGCTGAGGTGGAGAATGGACGGCTTGCCATTAGACCCGACAAAAAGCTGCATGCAGATTTAGGAATCAAACGGCAAGTTGTTGACATGATTCTCTCTTATAACACATTGTGGCTGAGAATTGGACTTGAGACCATATTTGGTGAAATTCTACCCATTCACTCCAACAATGACGTAACAGGTTTGACGCGTTTCCTCACAGACCGATTACTTGGGAACCCGGATATTGCTAGCGCCTTTGTTCATCCACAGGTCCCGGGACTGTATCGGGAAGGTTACGTGGAGCAGTTGGGAAAGTTTACTCTGAAGAAGTTTCTTCTGTTGGTGTTGTTCTTGGATTGCGCTAAGTTGACTCGGTTGATCGATCATGACCCTTGTCTCTTCAATAAAGAAGCTTCTTTTAAGTCAAGTCGCAGTCTTCTACTAACTTTCTCTCGCGAGTACCTCAAAGGAGAAGGAGACGTGACAAAGCATTTGAACTTTCTGGGGTACTCGGTCACGCATTCTCAGAGAGCGATTGACGAGGTCGATTATGCCGTGAAGAACATCGCTATAGATCTTAGAGATGGATTGCGATTAACGCGTGTGGCGGAGCTTTTGACTCAAGATTGGAAGCTATCAGCAAGTCTCCGCGTTCCAGCCATCTCCAGATTACAGAAAATCCATAACGTTGACGTTTTCATGAACGCGTTGAAAGCAAGAGGTGTTCTCGTGGGAGGAGTTAACGGTGGTGTTATTGACGCGCGCCACGTTGTGGATGGACACAGAGAGAAAACACTCGCTTTGCTTTGGCAAATTATTTTTCATTTTCAGGTCAATGTGCTTCTGAGCGAAAAATTACTCAAAGAGGAAATAGCTCACTTGGAAACTACCAGGCGTCTCCGCGTTCAATTAACTGCCGCAGACAACTGGACCGACGCGGATTTCGCGGGAAAACGCCGCGACTCGTCAGACCTGTATTTCCAGTCAGACAGGCTGCGCTTGCTTTTCAAGTGGTGTAAGATGGTTTGCAGGCTGTATGACTTAAAGATCGAGAACTTCACTGTTTCATTCTCGGACGGCCGTGCACTGTGCTACCTGCTCCACCATTATCACCCTTCACTGCTCCCCCGGTCAATCATAAAACAACAAACCAGTCTGACCTGTAATCCGGGGGTACACGACGCAAGTGACAGCGAGGGAGAGGAAGGAGTGGAAGTGAACTCGTGGACGGCAACATTTAGCCCAGGTTCTGGTACAAACACACTTCTCGAGGAACTGAAAAACAACGAGCGCGAAAATTTCCGTACAATGGCGGAGAAGGTCAAAGAACTGGGCGGGGTTCCTTTGATGACGAAGGCCTCGGACATGTCTTACACAATTCCTGACGAGAAGGTTGTTATCACGTATGTCGCGTATCTGTGCGCGCGGTTGTTGGATCTTCGTGAGGAAACGAAGGCCGCGCGCTGCATTCAGATGGCCTGGAGACGACATCGCCTTAAAAGGCAACTGGAGAGGAAAAAGAATGTTGCAAGGATAGTTGTTTTCGTTCAGGCACGAGCAAGAGCCGCTATAGCACGCCGTAGATTTCAAGCCATGAGGCAATCCGCTGTTCTCATTCAGTCTGTGTACCGTGGTCACCTGGTTCGTCAGCAACTTCGCGCTCGTCACCAAGCCGCGCGGTGCATCCAAACTCGCTACCTGGCCTTTAGAAAAGGCCGAGAGGTCATGGACTGGTACACTAGCCTCCGACAAACTGTAGTGCGACTACAAGCTATAGTATTGGCCAATCAGAGGAAACGACAAGCAGAGAGAAACCGAGCCGCGAAGCTGGTGCAGGCTGCTTGGAGAGGATATGAAGCAAGAAGACAGTTTGTTGAACAACGAGCGGCTTGTGTTAAGATTCAAGCTTTCATCAGAGCAGTCACAGAACGTAGGCGGTTTTTGCGGCTTCAAAGCGCAACTGTGCTGATTCAGAAAATCTACAGAGCATCGATGTCTGGGAGAAAAGAAAGGGAACGATATCTTCATCTAAGGAAGTGCACGATCGTGCTACAATCGTTCTTCAGAGGCGAGCGCGATCGTCGTCTCGTGAGGCAGATTCGCGCGGCTATCAAGATTCAGAGTCACGTGCGCGCGTGGCAAACTCGCGCGAGATTCGTTGTGTTGAAACAGGCAACTACCAAGATACAAGCTTACATTAGAATGTATCAAGAGCAGAGGAGGTTTGCTGTTATGAAGAATGCGACGAGAATTCTACAGGTCTACTTCAGAGCGGCTCTCCTTGGCCGGCAGCAAAAGATTGAGTACGAGTCTCAAAAGGCTGCTTGCATCAAGATTCAATCGCTGTTCAGATGTTACTTACAGAGGAAGGCGTTTTTAAAGAAGAGAGAAGCTTCTGTAAGGATCCAGTCCCTCTTCAGAAAGTATCTCGCACAGAAAAGATACCAGAAGCTTGTAACATCCACTCTGACGATCCAAAGAAGATTCAGGGAATTGCTTTGTGCAAAAAGCGCTCGGCAGAATTTCATACGGACAAAACTATCTGTTGTGAAGATCCAGTCGTGTTATAGAGGTTACAGATGTCGGAAGCAGTTTACGCGAGTCAGACAAGCGACTGTTACTCTTCAATCACATACGCGCGGCTTTCTAAGTAGAAAGAAGTTCTTGGCTTTCAAGCACGCTTCCGCCGTGATCCAAACTCGCTATCGCGCTCTGCTACAAGGACGTCGCCAGAGGATAGAATATCATGGCATCCGTCTTGCCATTGTTCGTCTTCAAGCTGTAGTCCGGCGCAAATCAGCTATCCGGATTCAAGCCTCGTTCCGCCAGTACATCGCTACGAAAAGATACCGCCAGATAAAGACCTCAGCTATGGTGATACAACAGCGTTATCGCTCCGTCTTACTGACGCGTTCACACGTTTCACAGTTTCAGCGGGTACGATCGTCTGTTGTGAAGATCCAGTCTTGCTATAGAGGTTACAGATGTCGGAAGCAGTTTATACGGGTCAAACAGGCGACTGTTACCCTTCAGTCGCATACGCGCAGTTTCCTAAGTCGAAAGAAGTTCTTGGCTTTCAAGCACGCTTCCGCCGTGATCCAAACTCGCTATCGCGCTCTGCTACAAGGACGTCGCCAGAGGATAGAATATCAACGCATGCGTCATGCTATTGTTCGTCTTCAAGCTGTAGTCCGGGGTAACATTGTCCGCGGACACCTTATGATCCAGCACAGATCAGCTATCCGGATTCAAGCTTCATTCCGCCAGTACCTTGCTACGAAAAGATACCACCAGATGAAGACCTCAGCTACGGTGATACAACAGCGTTATCGCTCCGTCTTACTGACGCGTTCACACGTTTCACAGTTTCAGCGGGTACGATCGTCTGTTGTGAAGATCCAGTCGTGCTATAGAGGTTACAGATGTCGGAAGCAGTTTACGCGAGTCAGACAAGCGACTGTTACCCTTCAATCACATACGCGCAGTTTCCTAAGTAGAAAGAAGTTCTTGGCTTTCAAGCACGCTTCCGCCGTGATCCAAACTCGTTATCGCGCTCTGCTACAAGGACGTCGCCAGAGGATAAAGTATCATCGCATGCGTCATGCCATAGTTCGTCTTCAAGCTGTAGTCCGGGGTAACATTGTCCGCGGACACCTTATGATCCAGCACAGATCAGCTATCCAGATTCAAGCTTCGTTTCGCCAGTACCTTGCTACGAAAAGATACCGCCAGTTGAAGAGTTCAGCTACGGTGATACAGCAGCGTTATCGCTCCGTCTTACTGACGCGTTCACACGTTGCACAGTTTCAGCGGGTACGATCGTCTGTCAAGCGCATTCAAGCGCATTACAGAGGGTATCGTGCGAGACGGTCCTACAGGATTCTCAAGGCGGCTGTAGTTTTGCAGTCTGCGGTTCGTGGTTGGCAAGTCAGGAAGGATCTCAAGCACCAGCATGTGGCCGCCACTGTGATCCAAACATTCTATAGAAGCCACGTGTCTCGTACGAAGTACCAATCATTAAGACATGCCGCTATAGTTTCTACAGCGTCGCTATCGCTCAATTCTACTCGGCCGTAA

Transcript

OS493_005827-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62285	Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Bos taurus OX=9913 GN=ASPM PE=2 SV=1
P62297	Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Ovis aries OX=9940 GN=ASPM PE=2 SV=1
P62296	Abnormal spindle-like microcephaly-associated protein homolog OS=Saimiri boliviensis boliviensis OX=39432 GN=ASPM PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15780 all species →	ASH	Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR031549 all species →	Domain	Abnormal spindle-like microcephaly-associated protein, ASH domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051185 all species →	Family	Abnormal Spindle-like Microcephaly-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22706 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0007051 all species →	Biological Process	spindle organization	Interproscan
GO:0051295 all species →	Biological Process	establishment of meiotic spindle localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16743	ASPM, ASP; abnormal spindle-like microcephaly-associated protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_005827-T1 global co-expression network