Gene detail

Detailed information of OS493_005829-T1 in Lophelia pertusa

Genomic Location: scaffold_12:1455259...1460018
NR annotation: KAJ7339431.1, hypothetical protein OS493_005829 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7UX13	Hercynylcysteine sulfoxide lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=egt-2 PE=1 SV=1
Q5MNI0	L-cysteine desulfhydrase-like protein lolT1 OS=Epichloe uncinata OX=5050 GN=lolT1 PE=2 SV=1
Q5MNH3	L-cysteine desulfhydrase-like protein lolT2 OS=Epichloe uncinata OX=5050 GN=lolT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43092 all species →	L-CYSTEINE DESULFHYDRASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_005829-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20247	EGT2; hercynylcysteine S-oxide lyase	EC:4.4.1.36	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005829-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.5Max TPM

12.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.91	12.91
polyp at pH7 6	18	18	11.22	13.87
coral polyp · control treatment	16	16	16.08	24.87
coral polyp · oil and dispersant treatment	16	16	15.25	27.51
coral polyp · oil treatment	16	16	13.73	23.44
coral polyp · dispersant treatment	16	16	10.77	18.01
Polyp	10	10	7.22	13.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.16
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.86

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.