Gene detail

Detailed information of OS493_005845-T1 in Lophelia pertusa

Genomic Location: scaffold_12:1695279...1697171
NR annotation: KAJ7339447.1, Protein yippee-like 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBE7	Protein yippee-like 5 OS=Bos taurus OX=9913 GN=YPEL5 PE=2 SV=1
Q65Z55	Protein yippee-like 5 OS=Chlorocebus aethiops OX=9534 GN=YPEL5 PE=2 SV=1
P62699	Protein yippee-like 5 OS=Homo sapiens OX=9606 GN=YPEL5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002046 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03226 all species →	Yippee-Mis18	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039058 all species →	Family	Yippee family	Interproscan
IPR034751 all species →	Domain	Yippee domain	Interproscan
IPR004910 all species →	Domain	Yippee/Mis18/Cereblon	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13848 all species →	PROTEIN YIPPEE-LIKE CG15309-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23339	YPEL5; protein yippee-like 5	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005845-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

72.0Max TPM

29.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.97	44.56
polyp at pH7 6	18	16	25.31	36.69
coral polyp · control treatment	16	16	37.96	72.05
coral polyp · oil and dispersant treatment	16	16	27.91	41.27
coral polyp · oil treatment	16	16	32.91	60.31
coral polyp · dispersant treatment	16	16	27.55	51.85
Polyp	10	10	25.19	57.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.40
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	57.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	46.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	39.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.