Gene detail

Detailed information of OS493_005847-T1 in Lophelia pertusa

Genomic Location: scaffold_12:1731422...1737750
NR annotation: KAJ7339449.1, hypothetical protein OS493_005847 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005614 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13886 all species →	DUF4203	Domain of unknown function (DUF4203)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040236 all species →	Family	Transmembrane protein 198	Interproscan
IPR025256 all species →	Domain	Domain of unknown function DUF4203	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31247 all species →	TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05040	SLC6A7, PROT; solute carrier family 6 (neurotransmitter transporter, L-proline) member 7	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005847-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

110.7Max TPM

38.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.64	76.65
polyp at pH7 6	18	18	36.19	63.33
coral polyp · control treatment	16	16	43.39	86.41
coral polyp · oil and dispersant treatment	16	16	42.44	110.65
coral polyp · oil treatment	16	16	39.19	98.28
coral polyp · dispersant treatment	16	16	46.61	101.52
Polyp	10	10	20.14	29.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.82
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.