Gene detail

Detailed information of OS493_005861-T1 in Lophelia pertusa

Genomic Location: scaffold_12:1818895...1827810
NR annotation: KAJ7339463.1, CDK5 regulatory subunit associated protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96SN8	CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens OX=9606 GN=CDK5RAP2 PE=1 SV=5
Q19UN5	CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes OX=9598 GN=CDK5RAP2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001978 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_005861-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052593 all species →	Family	Microtubule-associated AKAP9-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46501 all species →	MYOMEGALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0090063 all species →	Biological Process	positive regulation of microtubule nucleation	Interproscan
GO:1903358 all species →	Biological Process	regulation of Golgi organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005861-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005861-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.6Max TPM

24.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.02	36.78
polyp at pH7 6	18	18	24.16	40.65
coral polyp · control treatment	16	16	28.54	42.62
coral polyp · oil and dispersant treatment	16	16	22.00	37.36
coral polyp · oil treatment	16	16	25.08	51.48
coral polyp · dispersant treatment	16	16	18.06	25.78
Polyp	10	10	33.34	75.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.49
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	75.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	50.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	40.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.