Gene detail

Detailed information of OS493_005916-T1 in Lophelia pertusa

Genomic Location: scaffold_12:2365410...2377337
NR annotation: KAJ7339517.1, hypothetical protein OS493_005916 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009471 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08202 all species →	MIS13	Mis12-Mtw1 protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013218 all species →	Family	Kinetochore-associated protein Dsn1/Mis13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14778 all species →	KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000444 all species →	Cellular Component	MIS12/MIND type complex	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0000070 all species →	Biological Process	mitotic sister chromatid segregation	Interproscan
GO:0000818 all species →	Cellular Component	MIS12/MIND type complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005916-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005916-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

126.5Max TPM

24.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.06	51.76
polyp at pH7 6	18	18	33.97	51.25
coral polyp · control treatment	16	16	24.05	105.58
coral polyp · oil and dispersant treatment	16	16	18.97	126.49
coral polyp · oil treatment	16	16	21.18	53.07
coral polyp · dispersant treatment	16	16	11.58	22.90
Polyp	10	9	23.71	56.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.12
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	56.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	34.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.