Gene detail

Detailed information of OS493_005957-T1 in Lophelia pertusa

Genomic Location: scaffold_12:2810572...2818195
NR annotation: KAJ7339556.1, peptide-O-fucosyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V6X7	GDP-fucose protein O-fucosyltransferase 1 OS=Drosophila melanogaster OX=7227 GN=O-fut1 PE=1 SV=1
Q6EV70	GDP-fucose protein O-fucosyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Pofut1 PE=1 SV=1
P83337	GDP-fucose protein O-fucosyltransferase 1 OS=Cricetulus griseus OX=10029 GN=POFUT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10250 all species →	O-FucT	GDP-fucose protein O-fucosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039922 all species →	Family	GDP-fucose protein O-fucosyltransferase 1	Interproscan
IPR019378 all species →	Family	GDP-fucose protein O-fucosyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21420 all species →	GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0036066 all species →	Biological Process	protein O-linked fucosylation	Interproscan
GO:0046922 all species →	Molecular Function	peptide-O-fucosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03691	POFUT; peptide-O-fucosyltransferase	EC:2.4.1.221	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005957-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

20.8Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.96	15.35
polyp at pH7 6	18	18	8.68	15.40
coral polyp · control treatment	16	16	10.38	19.36
coral polyp · oil and dispersant treatment	16	16	8.55	20.79
coral polyp · oil treatment	16	16	11.94	20.59
coral polyp · dispersant treatment	16	16	5.94	9.12
Polyp	10	10	7.53	10.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.