Gene detail

Detailed information of OS493_005959-T1 in Lophelia pertusa

Genomic Location: scaffold_12:2826869...2839247
NR annotation: KAJ7339558.1, hypothetical protein OS493_005959 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15431	High affinity copper uptake protein 1 OS=Homo sapiens OX=9606 GN=SLC31A1 PE=1 SV=1
Q5RAS6	High affinity copper uptake protein 1 OS=Pongo abelii OX=9601 GN=SLC31A1 PE=2 SV=1
Q9JK41	High affinity copper uptake protein 1 OS=Rattus norvegicus OX=10116 GN=Slc31a1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000792 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04145 all species →	Ctr	Ctr copper transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007274 all species →	Family	Ctr copper transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12483 all species →	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005375 all species →	Molecular Function	copper ion transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0035434 all species →	Biological Process	copper ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14686	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_005959-T1 global co-expression network