Gene detail

Detailed information of OS493_006012-T1 in Lophelia pertusa

Genomic Location: scaffold_12:3671112...3682966
NR annotation: KAJ7339608.1, Myocyte-specific enhancer factor 2C [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4UTP7	Myocyte-specific enhancer factor 2C OS=Sus scrofa OX=9823 GN=MEF2C PE=2 SV=1
Q2MJT0	Myocyte-specific enhancer factor 2A OS=Rattus norvegicus OX=10116 GN=Mef2a PE=1 SV=1
Q02078	Myocyte-specific enhancer factor 2A OS=Homo sapiens OX=9606 GN=MEF2A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00319 all species →	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan
PF12347 all species →	HJURP_C	Holliday junction regulator protein family C-terminal repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036879 all species →	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan
IPR002100 all species →	Domain	Transcription factor, MADS-box	Interproscan
IPR033896 all species →	Domain	MADS MEF2-like	Interproscan
IPR022102 all species →	Domain	Holliday junction regulator protein family C-terminal	Interproscan
IPR050142 all species →	Family	MADS-box/MEF2 Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48019 all species →	SERUM RESPONSE FACTOR HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006012-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_006012-T1 global co-expression network