Detailed information of OS493_006018-T1 in Lophelia pertusa

Genomic Location: scaffold_12:3729125...3734360
NR annotation: KAJ7339614.1, hypothetical protein OS493_006018 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q14527Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2
Q95216Helicase-like transcription factor OS=Oryctolagus cuniculus OX=9986 GN=HLTF PE=1 SV=1
Q6PCN7Helicase-like transcription factor OS=Mus musculus OX=10090 GN=Hltf PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001701 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176
all species →		SNF2-rel_domSNF2-related domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR050628
all species →		FamilySNF2/RAD54 Helicase and Transcription FactorInterproscan
IPR038718
all species →		Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR000330
all species →		DomainSNF2, N-terminalInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45626
all species →		TRANSCRIPTION TERMINATION FACTOR 2-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0008094
all species →		Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0140658
all species →		Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_006018-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_006018-T1 global co-expression network
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