Gene detail

Detailed information of OS493_006041-T1 in Lophelia pertusa

Genomic Location: scaffold_12:3973866...3978537
NR annotation: KAJ7339635.1, maintenance of ER location [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91XQ4	DNA-directed RNA polymerase II subunit GRINL1A OS=Rattus norvegicus OX=10116 GN=Polr2m PE=2 SV=2
Q6P6I6	DNA-directed RNA polymerase II subunit GRINL1A OS=Mus musculus OX=10090 GN=Polr2m PE=2 SV=2
Q17QE3	DNA-directed RNA polymerase II subunit GRINL1A OS=Bos taurus OX=9913 GN=POLR2M PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15328 all species →	GCOM2	Putative GRINL1B complex locus protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026213 all species →	Family	DNA-directed RNA polymerase II subunit GRINL1	Interproscan
IPR051375 all species →	Family	Tuftelin/GRINL1A/MYZAP/CCD68	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23171 all species →	GDOWN1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003711 all species →	Molecular Function	transcription elongation factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21987	POLR2M, GRINL1A; DNA-directed RNA polymerase II subunit GRINL1A	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_006041-T1 global co-expression network