Detailed information of OS493_006051-T1 in Lophelia pertusa

Genomic Location: scaffold_12:4081911...4091876
NR annotation: KAJ7339644.1, Protein smg5 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6ZPY2Nonsense-mediated mRNA decay factor SMG5 OS=Mus musculus OX=10090 GN=Smg5 PE=1 SV=2
Q9UPR3Nonsense-mediated mRNA decay factor SMG5 OS=Homo sapiens OX=9606 GN=SMG5 PE=1 SV=3
F1R7R1Nonsense-mediated mRNA decay factor SMG5 OS=Danio rerio OX=7955 GN=smg5 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006483 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10374
all species →		EST1Telomerase activating protein Est1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045153
all species →		FamilyEst1/Ebs1-likeInterproscan
IPR019458
all species →		DomainTelomerase activating protein Est1-like, N-terminalInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15696
all species →		SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000184
all species →		Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005697
all species →		Cellular Componenttelomerase holoenzyme complexInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan
GO:0070034
all species →		Molecular Functiontelomerase RNA bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_006051-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_006051-T1 global co-expression network
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