Gene detail

Detailed information of OS493_006081-T1 in Lophelia pertusa

Genomic Location: scaffold_12:4503103...4505387
NR annotation: KAJ7339673.1, Transcription initiation factor TFIID subunit 13 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q148M7	Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1
Q15543	Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1
P61216	Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008498 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02269 all species →	TFIID-18kDa	Transcription initiation factor IID, 18kD subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003195 all species →	Family	Transcription initiation factor IID, subunit 13	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11380 all species →	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03127	TAF13; transcription initiation factor TFIID subunit 13	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_006081-T1 global co-expression network