Gene detail

Detailed information of OS493_006091-T1 in Lophelia pertusa

Genomic Location: scaffold_12:4566954...4575448
NR annotation: KAJ7339682.1, hypothetical protein OS493_006091, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7PRG3	3-hydroxykynurenine transaminase OS=Anopheles gambiae OX=7165 GN=HKT PE=1 SV=3
P21549	Alanine--glyoxylate aminotransferase OS=Homo sapiens OX=9606 GN=AGXT PE=1 SV=1
Q5RDP0	Alanine--glyoxylate aminotransferase OS=Pongo abelii OX=9601 GN=AGXT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003739 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR020578 all species →	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21152 all species →	AMINOTRANSFERASE CLASS V	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004760 all species →	Molecular Function	L-serine-pyruvate transaminase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008453 all species →	Molecular Function	alanine-glyoxylate transaminase activity	Interproscan
GO:0019265 all species →	Biological Process	glycine biosynthetic process, by transamination of glyoxylate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006091-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006091-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

72.9Max TPM

36.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.83	30.21
polyp at pH7 6	18	18	20.78	35.29
coral polyp · control treatment	16	16	48.70	69.72
coral polyp · oil and dispersant treatment	16	16	46.01	72.93
coral polyp · oil treatment	16	16	43.70	61.69
coral polyp · dispersant treatment	16	16	41.00	65.99
Polyp	10	10	43.10	72.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	72.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	68.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	56.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	52.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.33

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.