Gene detail

Detailed information of OS493_006098-T1 in Lophelia pertusa

Genomic Location: scaffold_12:4652140...4659694
NR annotation: KAJ7339686.1, hypothetical protein OS493_006098 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31029	Alanine--glyoxylate aminotransferase OS=Callithrix jacchus OX=9483 GN=AGXT PE=2 SV=1
P21549	Alanine--glyoxylate aminotransferase OS=Homo sapiens OX=9606 GN=AGXT PE=1 SV=1
P41689	Alanine--glyoxylate aminotransferase OS=Felis catus OX=9685 GN=AGXT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020578 all species →	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR024169 all species →	Family	Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21152 all species →	AMINOTRANSFERASE CLASS V	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004760 all species →	Molecular Function	L-serine-pyruvate transaminase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008453 all species →	Molecular Function	alanine-glyoxylate transaminase activity	Interproscan
GO:0019265 all species →	Biological Process	glycine biosynthetic process, by transamination of glyoxylate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006098-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006098-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

22.3Max TPM

11.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.77	15.55
polyp at pH7 6	18	18	9.25	17.14
coral polyp · control treatment	16	16	13.48	21.22
coral polyp · oil and dispersant treatment	16	16	13.34	22.33
coral polyp · oil treatment	16	16	11.91	20.54
coral polyp · dispersant treatment	16	16	12.81	21.94
Polyp	10	10	12.29	20.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.19
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.