Gene detail

Detailed information of OS493_006117-T1 in Lophelia pertusa

Genomic Location: scaffold_13:54334...58537
NR annotation: KAJ7393151.1, neurexin protein binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21927	Cholinesterase OS=Oryctolagus cuniculus OX=9986 GN=BCHE PE=2 SV=1
P06276	Cholinesterase OS=Homo sapiens OX=9606 GN=BCHE PE=1 SV=1
O62763	Acetylcholinesterase OS=Felis catus OX=9685 GN=ACHE PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050309 all species →	Family	Type-B Carboxylesterase/Lipase	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan
IPR019826 all species →	Active_site	Carboxylesterase type B, active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR019819 all species →	Conserved_site	Carboxylesterase type B, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11559 all species →	CARBOXYLESTERASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_006117-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006117-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006117-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

11.8Max TPM

4.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.82	8.15
polyp at pH7 6	18	18	5.48	8.22
coral polyp · control treatment	16	16	3.76	6.91
coral polyp · oil and dispersant treatment	16	14	3.65	11.78
coral polyp · oil treatment	16	16	5.41	11.41
coral polyp · dispersant treatment	16	16	3.12	6.07
Polyp	10	8	3.09	6.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.