Gene detail

Detailed information of OS493_006118-T1 in Lophelia pertusa

Genomic Location: scaffold_13:60908...69822
NR annotation: KAJ7393152.1, neurexin protein binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64176	Carboxylesterase 1E OS=Mus musculus OX=10090 GN=Ces1e PE=1 SV=1
G3V7J5	Pyrethroid hydrolase Ces2e OS=Rattus norvegicus OX=10116 GN=Ces2e PE=1 SV=2
Q91WU0	Carboxylesterase 1F OS=Mus musculus OX=10090 GN=Ces1f PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan
IPR019819 all species →	Conserved_site	Carboxylesterase type B, conserved site	Interproscan
IPR019826 all species →	Active_site	Carboxylesterase type B, active site	Interproscan
IPR050309 all species →	Family	Type-B Carboxylesterase/Lipase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11559 all species →	CARBOXYLESTERASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_006118-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006118-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006118-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

25.3Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.79	7.61
polyp at pH7 6	18	17	3.04	7.14
coral polyp · control treatment	16	16	4.11	10.79
coral polyp · oil and dispersant treatment	16	15	3.16	10.79
coral polyp · oil treatment	16	16	2.13	10.59
coral polyp · dispersant treatment	16	15	7.31	25.33
Polyp	10	8	0.86	3.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.