Gene detail

Detailed information of OS493_006119-T1 in Lophelia pertusa

Genomic Location: scaffold_13:71119...71835
NR annotation: KAJ7393153.1, Cocaine esterase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WMH2	Neuroligin-3 (Fragment) OS=Macaca mulatta OX=9544 GN=NLGN3 PE=2 SV=1
Q8BYM5	Neuroligin-3 OS=Mus musculus OX=10090 GN=Nlgn3 PE=1 SV=2
Q9NZ94	Neuroligin-3 OS=Homo sapiens OX=9606 GN=NLGN3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR051093 all species →	Family	Neuroligin and Bile salt-activated lipase	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43903 all species →	NEUROLIGIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007158 all species →	Biological Process	neuron cell-cell adhesion	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0048488 all species →	Biological Process	synaptic vesicle endocytosis	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0097104 all species →	Biological Process	postsynaptic membrane assembly	Interproscan
GO:0097105 all species →	Biological Process	presynaptic membrane assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006119-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006119-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

42.8Max TPM

8.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.53	21.32
polyp at pH7 6	18	15	7.05	20.02
coral polyp · control treatment	16	16	11.41	30.67
coral polyp · oil and dispersant treatment	16	15	8.96	20.99
coral polyp · oil treatment	16	16	6.80	32.66
coral polyp · dispersant treatment	16	15	13.72	42.76
Polyp	10	9	2.59	6.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.42
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.