Gene detail

Detailed information of OS493_006150-T1 in Lophelia pertusa

Genomic Location: scaffold_13:408583...421065
NR annotation: KAJ7393184.1, hypothetical protein OS493_006150 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CD89	Rhamnosyl O-methyltransferase OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML0127 PE=3 SV=1
Q7TXJ7	Rhamnosyl O-methyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2983C PE=3 SV=1
A1KMV3	Rhamnosyl O-methyltransferase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=BCG_2980c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04989 all species →	RMNT_CmcI	Rhamnosyl O-methyltransferase/CmcI	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007072 all species →	Family	Rhamnosyl O-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40048 all species →	RHAMNOSYL O-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030206 all species →	Biological Process	chondroitin sulfate biosynthetic process	Interproscan
GO:0071770 all species →	Biological Process	DIM/DIP cell wall layer assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006150-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006150-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

288.1Max TPM

28.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.72	35.12
polyp at pH7 6	18	18	19.91	28.28
coral polyp · control treatment	16	16	29.11	150.41
coral polyp · oil and dispersant treatment	16	15	35.29	187.23
coral polyp · oil treatment	16	16	38.42	169.95
coral polyp · dispersant treatment	16	16	34.56	288.10
Polyp	10	10	18.08	39.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	187.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	169.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	131.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	288.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	39.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	34.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.13
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.