Gene detail

Detailed information of OS493_006195-T1 in Lophelia pertusa

Genomic Location: scaffold_13:897522...899698
NR annotation: KAJ7393226.1, Xyloside xylosyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U4G3	Xyloside xylosyltransferase 1 OS=Mus musculus OX=10090 GN=Xxylt1 PE=1 SV=2
Q8NBI6	Xyloside xylosyltransferase 1 OS=Homo sapiens OX=9606 GN=XXYLT1 PE=1 SV=1
Q66PG2	Xylosyl- and glucuronyltransferase LARGE1 OS=Danio rerio OX=7955 GN=large1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01501 all species →	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR042465 all species →	Family	Xyloside xylosyltransferase 1	Interproscan
IPR002495 all species →	Family	Glycosyl transferase, family 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46612 all species →	XYLOSIDE XYLOSYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0035252 all species →	Molecular Function	UDP-xylosyltransferase activity	Interproscan
GO:0140560 all species →	Molecular Function	xylosyl alpha-1,3-xylosyltransferase activity	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23800	XXYLT1; xylosyl alpha-1,3-xylosyltransferase	EC:2.4.2.62	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006195-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

15.2Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.93	5.12
polyp at pH7 6	18	18	4.17	7.29
coral polyp · control treatment	16	16	7.36	15.24
coral polyp · oil and dispersant treatment	16	16	6.31	12.37
coral polyp · oil treatment	16	16	6.39	11.42
coral polyp · dispersant treatment	16	16	3.57	7.34
Polyp	10	9	3.14	6.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.