Gene detail

Detailed information of OS493_006204-T1 in Lophelia pertusa

Genomic Location: scaffold_13:970514...981707
NR annotation: KAJ7393235.1, Zinc-binding domain [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008730 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13695 all species →	zf-3CxxC	Zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027377 all species →	Domain	ZAR1/RTP1-5-like, 3CxxC-type zinc finger	Interproscan
IPR026096 all species →	Family	Receptor-transporting protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14402 all species →	RECEPTOR TRANSPORTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006612 all species →	Biological Process	protein targeting to membrane	Interproscan
GO:0031849 all species →	Molecular Function	olfactory receptor binding	Interproscan
GO:0051205 all species →	Biological Process	protein insertion into membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006204-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006204-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

61.6Max TPM

26.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.35	30.84
polyp at pH7 6	18	18	13.15	16.78
coral polyp · control treatment	16	16	35.89	55.50
coral polyp · oil and dispersant treatment	16	16	32.31	44.07
coral polyp · oil treatment	16	16	30.37	51.20
coral polyp · dispersant treatment	16	16	30.25	61.58
Polyp	10	10	21.98	39.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	39.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.