Gene detail

Detailed information of OS493_006214-T1 in Lophelia pertusa

Genomic Location: scaffold_13:1130288...1132764
NR annotation: KAJ7393245.1, hypothetical protein OS493_006214 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020850 all species →	Domain	GTPase effector domain	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006214-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006214-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

140.9Max TPM

39.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.45	61.48
polyp at pH7 6	18	18	23.21	37.77
coral polyp · control treatment	16	16	40.91	70.19
coral polyp · oil and dispersant treatment	16	16	52.32	131.81
coral polyp · oil treatment	16	16	33.33	70.52
coral polyp · dispersant treatment	16	16	64.55	140.92
Polyp	10	10	22.56	49.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.86
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	131.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	49.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.95
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.