Gene detail

Detailed information of OS493_006256-T1 in Lophelia pertusa

Genomic Location: scaffold_13:1398858...1399280
NR annotation: KAJ7393287.1, Borealin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O73753	Neuroblastoma suppressor of tumorigenicity 1 OS=Xenopus laevis OX=8355 GN=nbl1 PE=1 SV=1
Q90YC9	Neuroblastoma suppressor of tumorigenicity 1 OS=Gallus gallus OX=9031 GN=NBL1 PE=2 SV=2
Q6DF53	Neuroblastoma suppressor of tumorigenicity 1 OS=Xenopus tropicalis OX=8364 GN=nbl1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001052 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03045 all species →	DAN	DAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR004133 all species →	Domain	DAN	Interproscan
IPR006207 all species →	Domain	Cystine knot, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15283 all species →	GREMLIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0036122 all species →	Molecular Function	BMP binding	Interproscan
GO:0038098 all species →	Biological Process	sequestering of BMP from receptor via BMP binding	Interproscan
GO:0048018 all species →	Molecular Function	receptor ligand activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006256-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006256-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

10.8Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.14	7.97
polyp at pH7 6	18	14	2.44	9.23
coral polyp · control treatment	16	15	3.34	10.73
coral polyp · oil and dispersant treatment	16	14	1.78	4.33
coral polyp · oil treatment	16	15	2.53	8.10
coral polyp · dispersant treatment	16	15	1.33	3.55
Polyp	10	9	2.26	10.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.