Gene detail

Detailed information of OS493_006288-T1 in Lophelia pertusa

Genomic Location: scaffold_13:1698490...1713877
NR annotation: KAJ7393318.1, ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_006288-T1

ATGAAGCAGGCCGTGGAATTCGAAGAGTGTCTCATGGACTCGCCGAGATTCAGGTTACAGATTGATCAAAATGAACATGACATCAATGTTTTGGAAGGAGCTCTGGAAAAGCTTATCAAGCTTTGTAATGGAATGGTTGAGACAGGGAAATCATTCAACTCATCTACAAGGGCCTTGGTGGGTGACCTACTTATCAATTCTTTAGATCAAGCTCAGAGATCTATATCCAGTACTCTGCAAACTTTCATCAAAGAAGAAGTCAAGAAGGTTAAGGAGACCAAAAAACTGTTCGACAGAGTTAGTGGTGATTTGGATAGTGCCTTGACGAGAAATGCACAACTTCAGCATCACTGTAAGGCGACTGAGGCTGAGGAGGCAAAGAATATTGTGACAGCAATGCATTCGTGTTTTAACCATACAGCATTGGATTATGCCTTCCAGATCAACATTTTGCAGTCACGGAGGAGAATTGATGTTCTGGATACGATTCTAAAGTTCATGCATGCACAGTCAACGTACTTTCACCAGGGCTACGACTTGATGAATGATTTAGATGAGTACATGAAGAAAGTGTCAAGTGAGCTAGAAGAAGTGTCCACTCAGTTTACAGTGGACAAGAAAGAGATGGAGGAGAGGCACACCCTGGTCCAGAGAACGGAGGAAACTGGGTGTTTAGGAAGAAGGAACCTGGATGATCCAAGTGGTTTGGTGATGGAAGGCTACTTGTTTAAAAGGAGTAGTAATGCTTTTAGGAGTTGGCATAGGAGATATTTTACAGTACAAAACAACCAGCTGATGTATCAGAAGCGATTAAAGGATGACCAAACAGTACTTGCTGAAGACCTTAGATTGTGTAAAATCAGGCTTGCAGAAGAAGCAGTGGAAAGAAGATTCATCTTTGAAGTTGTCTCACCAACAAAGTCATGGTATCTTCAAGCGGACAGTGTATCATTACGAGAGGAATGGATGGAAGCTATGCAGGCTAGCATTGACAAGGCTTTTAACGACTGCACAACCACTGGAGAAACTGACAGTAGTGAGAGTGACTCGCTGGGATCAGGCATTAAGAGCAAAAGTATGGATTCTTTAGACAAAATATCTGGACCAGCAAGAAGTACTCTGGAAGTTATTAGAGCTGTGGCTGGTAATGACAAGTGCGCTGACTGTGGAAGTCCTGATCCAACCTGGGCAAGCACCAACTGGGGAATTGTGCTATGTATAGAATGCTCAGGAATTCATAGGAGTTTGGGTGTGCATGTGTCCAAGGTACGCTCGCTGATTCTTGATGCCTGGGAACCAGAGCAAATTAAGTTAATGACAGAACTGGGAAATGAGTTAGTGAATGGAATCCTTGAAGCCAAAGCTGAATCTAATACGAAGAAGCTTACTCCCCAGAGCAGCAGGAGTGAGAGGGAGACTTGGATCAAATTAAAATATTCACAGCACAAGTTTGTGTCCCTGGAAATATTTCTAACCAAGTGTCAAAGTCTGGATAAAGGCATCGTAAAAAATCTGGCTAGAATGAAAGTTTACCATGAGGAAAAGGATCTACCTGTTGGAAGAACAGACTCAAAAAAGAGTAAACTTTTCAAAAGGAAACTTGCCATAAAAGGAAATAAGTCTAAAGTGGACAAGCGAAAGAGCGCACCCGCTGAAATGTTTTTATCGGACCTGACGAGTAAAGACTATGAAAAATTAGAAAAGCTGGCTTCTAATTTTATTCATAATGACGAGACAGCTAGTAGTGACTCGCATGACGAGGACAGACCAGGGAGTGCATCACAGACAGGGTCTCCTGATGGCGGCAAGAGGCCGCGGGCGGCCTCTGCTAGTGTGGTGGGAGTGTCATTGTCATCAGACGAGGGTAGAGGTAGAGGAGCGTCACTTGATTCGACATTGAGTGAAGATGGTCTTACTGCTACATGTCACAATGATAATGCTGAGATTGTTGTTGATGAGGAGAAAAATCTAAAGGAAGACAGGGATAAAGCTATTGCTGTGTTGAAAAGAGTCCATCCCAGCAGGTTACTTTTCAAAGCTGCAGAATGGAAAAGTCTTCCTCTTATGGCAGCGTCACTTGCTGAAGGTGCCAAAGTAAACTGGGTGAATGAAGATGATGACCATAAAACAGCACTTCATCAGTCTGTTCTAGGGGGATCATTACCAGCTTGTGAGTTCCTGCTACAAAATGGTGCCAAGATAAATCAGAAGGACAAGAGAGGAAGAGGCGCTCTTCATCATGCAGCTCTACTGGGGCAGACAGGTCCAATCCTGCTGTTCTTGAAACGAGGAGGTAATCAACATGCCGTTGATGAGAATGGGGAGGACCCTCTTACCATTGCTTTGAAACAAACCAATGCAGACATAGTCACCCTGTTAAGACTGGCAAGATTGAATGAAGAAATGAGAGAAGATAATGAAGTTATACAAGGTGACGTTACATTCACTGATGTATTCAGAGACTTTTCAAACATGGCCTCAAAAGATCCCGACAGGCTGAAAAGGAAGTTTGATTCCAAAGATCCACACAGACAGACACAATTATGA

Transcript

OS493_006288-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZK62	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ACAP2 PE=2 SV=1
Q6IVG4	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Oryctolagus cuniculus OX=9986 GN=ACAP2 PE=2 SV=1
Q15057	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ACAP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003672 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF16746 all species →	BAR_3	BAR domain of APPL family	Domain	Interproscan
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR045258 all species →	Family	ArfGAP ACAP1/2/3-like	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23180 all species →	CENTAURIN/ARF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12489	ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_006288-T1 global co-expression network