Gene detail

Detailed information of OS493_006306-T1 in Lophelia pertusa

Genomic Location: scaffold_13:1871262...1882454
NR annotation: KAJ7393336.1, ATPase AAA domain-containing protein 3-B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PAX2	ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis OX=8355 GN=atad3-b PE=2 SV=1
Q58E76	ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis OX=8355 GN=atad3-a PE=2 SV=1
Q6NVR9	ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=atad3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005459 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF12037 all species →	ATAD3_N	ATPase family AAA domain-containing protein 3, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039188 all species →	Family	ATPase family AAA domain-containing protein 3	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR021911 all species →	Domain	ATPase family AAA domain-containing protein 3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23075 all species →	PUTATIVE ATP-ASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17681	ATAD3A_B; ATPase family AAA domain-containing protein 3A/B	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006306-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

28.3Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.36	9.32
polyp at pH7 6	18	18	7.45	16.10
coral polyp · control treatment	16	16	9.05	28.31
coral polyp · oil and dispersant treatment	16	16	8.91	14.77
coral polyp · oil treatment	16	16	6.12	15.64
coral polyp · dispersant treatment	16	16	7.08	16.06
Polyp	10	9	4.96	11.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.