Gene detail

Detailed information of OS493_006313-T1 in Lophelia pertusa

Genomic Location: scaffold_13:1914281...1914640
NR annotation: KAJ7393342.1, Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SY23	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial OS=Danio rerio OX=7955 GN=aldh4a1 PE=2 SV=1
A7YWE4	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=ALDH4A1 PE=2 SV=1
P30038	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ALDH4A1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004612 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_006313-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR050485 all species →	Family	Proline metabolism enzyme	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42862 all species →	DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003842 all species →	Molecular Function	1-pyrroline-5-carboxylate dehydrogenase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0010133 all species →	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006313-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006313-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

194.2Max TPM

70.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	54.79	84.59
polyp at pH7 6	18	18	57.95	80.60
coral polyp · control treatment	16	16	92.77	179.93
coral polyp · oil and dispersant treatment	16	16	81.08	122.98
coral polyp · oil treatment	16	16	73.87	133.35
coral polyp · dispersant treatment	16	16	77.31	194.15
Polyp	10	10	54.28	85.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	194.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	85.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	69.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	67.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	64.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	63.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	58.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	53.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	37.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.