Gene detail

Detailed information of OS493_006336-T1 in Lophelia pertusa

Genomic Location: scaffold_13:2132825...2136013
NR annotation: KAJ7393365.1, 39S ribosomal protein L47, mitochondrial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K2Y7	Large ribosomal subunit protein uL29m OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2
Q08DT6	Large ribosomal subunit protein uL29m OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1
Q9HD33	Large ribosomal subunit protein uL29m OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008482 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06984 all species →	MRP-L47	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010729 all species →	Family	Large ribosomal subunit protein uL29m, mitochondrial	Interproscan
IPR038340 all species →	Homologous_superfamily	MRP-L47 superfamily, mitochondrial	Interproscan
IPR036049 all species →	Homologous_superfamily	Large ribosomal subunit protein uL29 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21183 all species →	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005761 all species →	Cellular Component	mitochondrial ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17428	MRPL47, NCM1; large subunit ribosomal protein L47	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_006336-T1 global co-expression network