Gene detail

Detailed information of OS493_006394-T1 in Lophelia pertusa

Genomic Location: scaffold_13:2842387...2844306
NR annotation: KAJ7393421.1, hypothetical protein OS493_006394 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q94469	Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum OX=44689 GN=gpdA PE=1 SV=2
Q5R2J2	Glyceraldehyde-3-phosphate dehydrogenase OS=Pelodiscus sinensis OX=13735 GN=GAPDH PE=2 SV=1
Q96UF1	Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Mucor circinelloides f. lusitanicus OX=29924 GN=GPD3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002620 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02800 all species →	Gp_dh_C	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020829 all species →	Domain	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	Interproscan
IPR020831 all species →	Family	Glyceraldehyde/Erythrose phosphate dehydrogenase family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10836 all species →	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0004365 all species →	Molecular Function	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006394-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006394-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,670.6Max TPM

793.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	891.57	1,139.43
polyp at pH7 6	18	18	923.79	1,244.52
coral polyp · control treatment	16	16	745.36	1,293.26
coral polyp · oil and dispersant treatment	16	16	674.97	1,208.39
coral polyp · oil treatment	16	16	732.62	1,121.64
coral polyp · dispersant treatment	16	16	804.62	1,670.62
Polyp	10	10	724.35	1,261.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,139.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,135.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,023.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,004.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	953.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	947.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	909.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	908.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	863.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	824.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	822.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	813.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	810.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	799.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	794.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	771.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	766.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	759.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,244.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,228.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,172.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,147.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,036.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,017.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,006.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	971.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	892.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	879.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	873.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	873.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	838.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	828.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	699.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	671.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	630.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	616.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,293.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,277.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,113.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	899.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	824.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	726.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	717.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	693.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	658.61
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	611.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	602.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	579.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	527.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	486.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	459.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	457.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,208.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,142.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,017.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,017.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,007.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	771.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	739.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	576.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	536.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	518.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	506.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	447.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	356.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	339.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	320.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	292.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,121.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,044.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,027.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	873.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	846.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	832.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	763.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	756.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	734.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	643.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	637.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	566.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	518.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	470.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	467.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	416.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,670.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,230.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,169.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	934.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	898.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	837.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	818.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	743.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	713.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	675.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	664.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	650.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	545.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	503.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	438.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	378.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,261.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	843.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	793.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	786.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	763.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	749.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	586.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	559.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	475.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	423.45

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.