Gene detail

Detailed information of OS493_006456-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3614714...3615613
NR annotation: KAJ7393475.1, hypothetical protein OS493_006456 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002553 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01435 all species →	Peptidase_M48	Peptidase family M48	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026620 all species →	Family	Transmembrane protein 177	Interproscan
IPR001915 all species →	Domain	Peptidase M48	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21824 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006456-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006456-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

6.0Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.56	4.14
polyp at pH7 6	18	18	2.89	4.43
coral polyp · control treatment	16	16	2.98	5.06
coral polyp · oil and dispersant treatment	16	16	1.74	4.34
coral polyp · oil treatment	16	16	2.91	5.97
coral polyp · dispersant treatment	16	16	0.89	2.07
Polyp	10	10	1.87	3.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.