Gene detail

Detailed information of OS493_006464-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3654601...3660260
NR annotation: KAJ7393482.1, hypothetical protein OS493_006464 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7HHM9	Urease accessory protein UreD OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=ureD PE=3 SV=1
A9GP79	Urease accessory protein UreD OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=ureD PE=3 SV=2
P87125	Uncharacterized urease accessory protein ureD-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC3A12.09c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01774 all species →	UreD	UreD urease accessory protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002669 all species →	Family	Urease accessory protein UreD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33643 all species →	UREASE ACCESSORY PROTEIN D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006464-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006464-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

30.2Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.85	10.63
polyp at pH7 6	18	18	8.12	13.41
coral polyp · control treatment	16	16	10.27	26.55
coral polyp · oil and dispersant treatment	16	16	5.64	20.98
coral polyp · oil treatment	16	16	12.08	30.19
coral polyp · dispersant treatment	16	16	4.61	15.12
Polyp	10	9	9.25	16.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.