Gene detail

Detailed information of OS493_006468-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3685054...3689874
NR annotation: KAJ7393486.1, hypothetical protein OS493_006468 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01774 all species →	UreD	UreD urease accessory protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002669 all species →	Family	Urease accessory protein UreD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33643 all species →	UREASE ACCESSORY PROTEIN D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03190	ureD, ureH; urease accessory protein	-	Protein processing	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006468-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

23.1Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.28	18.38
polyp at pH7 6	18	18	10.96	20.59
coral polyp · control treatment	16	16	7.54	20.29
coral polyp · oil and dispersant treatment	16	16	5.63	23.06
coral polyp · oil treatment	16	16	5.98	11.33
coral polyp · dispersant treatment	16	16	4.72	13.64
Polyp	10	10	10.79	18.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.