Gene detail

Detailed information of OS493_006481-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3755634...3757379
NR annotation: KAJ7393498.1, hedgehog receptor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KFU9	Protein dispatched homolog 3 OS=Mus musculus OX=10090 GN=Disp3 PE=2 SV=1
Q9P2K9	Protein dispatched homolog 3 OS=Homo sapiens OX=9606 GN=DISP3 PE=1 SV=2
B9U3F2	Protein dispatched homolog 3 OS=Gallus gallus OX=9031 GN=DISP3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007833 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_006481-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR001036 all species →	Family	Acriflavin resistance protein	Interproscan
IPR042480 all species →	Family	Protein dispatched homolog 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46687 all species →	PROTEIN DISPATCHED HOMOLOG 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006481-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006481-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

167.1Max TPM

51.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.34	48.22
polyp at pH7 6	18	18	29.51	45.74
coral polyp · control treatment	16	16	64.59	127.57
coral polyp · oil and dispersant treatment	16	16	98.76	167.07
coral polyp · oil treatment	16	16	49.47	90.18
coral polyp · dispersant treatment	16	16	65.05	163.21
Polyp	10	10	16.96	41.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.