Gene detail

Detailed information of OS493_006496-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3849975...3850469
NR annotation: KAJ7393512.1, amine oxidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000872 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02727 all species →	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016182 all species →	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan
IPR015800 all species →	Domain	Copper amine oxidase, N2-terminal	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_006496-T1 in Lophelia pertusa.

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006496-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006496-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

29.6Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.56	5.49
polyp at pH7 6	18	18	3.58	8.12
coral polyp · control treatment	16	16	9.10	19.53
coral polyp · oil and dispersant treatment	16	16	13.75	29.63
coral polyp · oil treatment	16	16	7.19	14.99
coral polyp · dispersant treatment	16	16	9.77	23.90
Polyp	10	9	1.76	4.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.91
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.52
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.40
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.06
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.