Gene detail

Detailed information of OS493_006515-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3967248...3974709
NR annotation: KAJ7393531.1, Chloride transport protein 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51797	H(+)/Cl(-) exchange transporter 6 OS=Homo sapiens OX=9606 GN=CLCN6 PE=1 SV=2
O35454	H(+)/Cl(-) exchange transporter 6 OS=Mus musculus OX=10090 GN=Clcn6 PE=1 SV=1
Q9TT16	H(+)/Cl(-) exchange transporter 6 OS=Oryctolagus cuniculus OX=9986 GN=CLCN6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001932 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002248 all species →	Family	Chloride channel ClC-6	Interproscan
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR051280 all species →	Family	Voltage-gated chloride channel/antiporter	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11689 all species →	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0015108 all species →	Molecular Function	chloride transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006515-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006515-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

23.7Max TPM

11.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.56	16.68
polyp at pH7 6	18	18	10.80	18.94
coral polyp · control treatment	16	16	14.31	23.67
coral polyp · oil and dispersant treatment	16	16	8.92	14.58
coral polyp · oil treatment	16	16	13.77	23.08
coral polyp · dispersant treatment	16	16	9.54	18.58
Polyp	10	10	8.15	12.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.