Gene detail

Detailed information of OS493_006520-T1 in Lophelia pertusa

Genomic Location: scaffold_13:3994358...3997008
NR annotation: KAJ7393536.1, hypothetical protein OS493_006520 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TA11	Cilia- and flagella-associated protein 107 OS=Bos taurus OX=9913 GN=CFAP107 PE=1 SV=1
Q4KKZ1	Cilia- and flagella-associated protein 107 OS=Mus musculus OX=10090 GN=Cfap107 PE=1 SV=2
Q8N1D5	Cilia- and flagella-associated protein 107 OS=Homo sapiens OX=9606 GN=CFAP107 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006053 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_006520-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR037662 all species →	Family	Cilia- and flagella-associated protein 68/107	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31180 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_006520-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006520-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006520-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

71.0Max TPM

12.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.61	13.36
polyp at pH7 6	18	18	5.54	11.52
coral polyp · control treatment	16	16	17.28	71.01
coral polyp · oil and dispersant treatment	16	15	17.03	37.50
coral polyp · oil treatment	16	16	14.94	29.08
coral polyp · dispersant treatment	16	16	17.50	40.11
Polyp	10	9	10.19	20.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.