Gene detail

Detailed information of OS493_006529-T1 in Lophelia pertusa

Genomic Location: scaffold_13:4044656...4049069
NR annotation: KAJ7393545.1, hypothetical protein OS493_006529 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001325 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35169 all species →	FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_006529-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006529-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006529-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

16.8Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.35	10.13
polyp at pH7 6	18	18	5.91	9.74
coral polyp · control treatment	16	16	9.47	14.92
coral polyp · oil and dispersant treatment	16	16	6.21	13.28
coral polyp · oil treatment	16	16	8.46	16.81
coral polyp · dispersant treatment	16	16	5.84	9.92
Polyp	10	9	3.90	9.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.