Gene detail

Detailed information of OS493_006555-T1 in Lophelia pertusa

Genomic Location: scaffold_13:4230876...4232229
NR annotation: KAJ7393570.1, hypothetical protein OS493_006555 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JHG1	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Mus musculus OX=10090 GN=Pigp PE=2 SV=1
Q5R946	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Pongo abelii OX=9601 GN=PIGP PE=2 SV=1
P57054	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Homo sapiens OX=9606 GN=PIGP PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008797 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08510 all species →	PIG-P	PIG-P	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052263 all species →	Family	GPI Anchor Biosynthesis Protein	Interproscan
IPR013717 all species →	Domain	PIG-P	Interproscan
IPR016542 all species →	Family	Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46346 all species →	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0017176 all species →	Molecular Function	phosphatidylinositol N-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03861	PIGP, GPI19, DSCR5; phosphatidylinositol N-acetylglucosaminyltransferase subunit P	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006555-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

23.0Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.21	10.65
polyp at pH7 6	18	16	6.28	11.98
coral polyp · control treatment	16	16	10.37	23.01
coral polyp · oil and dispersant treatment	16	16	5.81	16.60
coral polyp · oil treatment	16	16	8.22	14.58
coral polyp · dispersant treatment	16	16	4.96	13.51
Polyp	10	9	6.49	18.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.