Gene detail

Detailed information of OS493_006570-T1 in Lophelia pertusa

Genomic Location: scaffold_13:4346059...4348582
NR annotation: KAJ7393585.1, hypothetical protein OS493_006570 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000703 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08395 all species →	7tm_7	7tm Chemosensory receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013604 all species →	Family	7TM chemosensory receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21421 all species →	GUSTATORY RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007606 all species →	Biological Process	sensory perception of chemical stimulus	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050909 all species →	Biological Process	sensory perception of taste	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08471	GR; gustatory receptor	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006570-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

37.4Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.77	6.45
polyp at pH7 6	18	16	3.75	7.93
coral polyp · control treatment	16	16	7.05	18.11
coral polyp · oil and dispersant treatment	16	15	10.33	37.39
coral polyp · oil treatment	16	16	4.71	9.51
coral polyp · dispersant treatment	16	16	5.13	8.94
Polyp	10	9	3.74	8.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.