Gene detail

Detailed information of OS493_006590-T1 in Lophelia pertusa

Genomic Location: scaffold_13:4476104...4480675
NR annotation: KAJ7393604.1, hypothetical protein OS493_006590 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001325 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35169 all species →	FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_006590-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006590-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006590-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

30.0Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.00	12.68
polyp at pH7 6	18	18	7.57	12.43
coral polyp · control treatment	16	16	11.79	30.01
coral polyp · oil and dispersant treatment	16	16	7.04	29.47
coral polyp · oil treatment	16	16	9.26	15.52
coral polyp · dispersant treatment	16	16	6.40	11.53
Polyp	10	10	7.54	15.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.