Gene detail

Detailed information of OS493_006612-T1 in Lophelia pertusa

Genomic Location: scaffold_13:4597409...4598298
NR annotation: KAJ7393625.1, Ankyrin repeat domain-containing protein 49 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EA33	Ankyrin repeat domain-containing protein 49 OS=Bos taurus OX=9913 GN=ANKRD49 PE=2 SV=1
Q8WVL7	Ankyrin repeat domain-containing protein 49 OS=Homo sapiens OX=9606 GN=ANKRD49 PE=1 SV=1
Q8VE42	Ankyrin repeat domain-containing protein 49 OS=Mus musculus OX=10090 GN=Ankrd49 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051637 all species →	Family	Ankyrin repeat domain-containing protein 49	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24180 all species →	CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006612-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006612-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

86.4Max TPM

23.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.13	44.78
polyp at pH7 6	18	18	31.59	51.39
coral polyp · control treatment	16	16	21.88	43.64
coral polyp · oil and dispersant treatment	16	16	16.49	26.97
coral polyp · oil treatment	16	16	22.76	28.50
coral polyp · dispersant treatment	16	16	6.33	12.25
Polyp	10	10	42.96	86.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	86.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	61.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	54.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	49.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	38.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	26.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.