Detailed information of OS493_006624-T1 in Lophelia pertusa

Genomic Location: scaffold_14:37775...63829
NR annotation: KAJ7386639.1, hypothetical protein OS493_006624 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A4QNS7GATOR2 complex protein MIOS-B OS=Xenopus laevis OX=8355 GN=mios-b PE=2 SV=1
Q8VE19GATOR2 complex protein MIOS OS=Mus musculus OX=10090 GN=Mios PE=1 SV=2
Q802U2GATOR2 complex protein MIOS OS=Danio rerio OX=7955 GN=mios PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002871 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17034
all species →		zinc_ribbon_16Zinc-ribbon like familyFamilyInterproscan
PF21719
all species →		MIOS_a-solMIOS, alpha-solenoidRepeatInterproscan
PF21720
all species →		MIOS_WD40MIOS, WD40 repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031488
all species →		DomainGATOR2 complex protein MIO, zinc-ribbon like domainInterproscan
IPR037593
all species →		FamilyMIOS/Sea4Interproscan
IPR049092
all species →		DomainMIOS-like, alpha-solenoid domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16453
all species →		WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0034198
all species →		Biological Processcellular response to amino acid starvationInterproscan
GO:1904263
all species →		Biological Processpositive regulation of TORC1 signalingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_006624-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_006624-T1 global co-expression network
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